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  5. Aspi01Gene54730.t1

Aspi01Gene54730.t1 (Aspi01Gene54730)


Aliases : Aspi01Gene54730

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene54730.t1

Target Alias Description ECC score Gene Family Method Actions
AT4G37380 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g006574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g042866 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060301 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069020 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17019 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07022 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19114 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000167 No alias not classified & original description: CDS=1-1701 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001613 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: CDS=195-1385 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025565 No alias not classified & original description: CDS=1-3945 0.04 OrthoFinder output from all 47 species
Azfi_s0058.g034473 No alias not classified & original description: CDS=1-2799 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.05 OrthoFinder output from all 47 species
Azfi_s0118.g046610 OTP86 not classified & original description: CDS=1-2490 0.03 OrthoFinder output from all 47 species
Azfi_s0373.g067166 No alias not classified & original description: CDS=1-2166 0.05 OrthoFinder output from all 47 species
Cba_g04690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G036800.1 VAC1, ECB2,... not classified & original description: pacid=50605276... 0.03 OrthoFinder output from all 47 species
GSVIVT01008656001 No alias Pentatricopeptide repeat-containing protein At5g50990... 0.03 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Ppi_g13037 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002764 No alias not classified & original description: CDS=1-2754 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020618 REME1 not classified & original description: CDS=24-1478 0.03 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g47343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo173093 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Smo76916 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 235 282
IPR002885 Pentatricopeptide_repeat 437 485
IPR002885 Pentatricopeptide_repeat 337 384
IPR002885 Pentatricopeptide_repeat 135 181
IPR002885 Pentatricopeptide_repeat 580 605
IPR002885 Pentatricopeptide_repeat 109 134
IPR002885 Pentatricopeptide_repeat 541 571
IPR002885 Pentatricopeptide_repeat 614 637
IPR002885 Pentatricopeptide_repeat 309 332
No external refs found!