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  5. Aspi01Gene54670.t1

Aspi01Gene54670.t1 (PUB8, B80, Aspi01Gene54670)


Aliases : PUB8, B80, Aspi01Gene54670

Description : E3 ubiquitin ligase *(PUB8) & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene54670.t1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00223570 PUB26,... U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00128940 evm_27.TU.AmTr_v1... U-box domain-containing protein 30 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G66160 CMPG1, ATCMPG1 CYS, MET, PRO, and GLY protein 1 0.04 OrthoFinder output from all 47 species
AT3G52450 PUB22 plant U-box 22 0.03 OrthoFinder output from all 47 species
Aob_g01235 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04774 PUB25 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cre03.g185750 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_19502 PUB23 U-box domain-containing protein 25 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os01g57735.1 LOC_Os01g57735 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g49970.1 PUB23, LOC_Os04g49970 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp7g11020.1 PUB25 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Msp_g25038 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36530 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42860 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014903 PUB26 not classified & original description: CDS=1-1419 0.03 OrthoFinder output from all 47 species
Smo105050 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g007050.3.1 PUB24, Solyc01g007050 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e015491_P001 PUB23, Zm00001e015491 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000225 Armadillo 304 342
IPR006911 ARM-rpt_dom 140 264
IPR003613 Ubox_domain 5 75
No external refs found!