Aspi01Gene52539.t1 (PKL, GYM, CHR6, SSL2,...)

Aliases : PKL, GYM, CHR6, SSL2, CHD3, Aspi01Gene52539

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene52539.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00245560	ATCHR12,...	Chromatin organisation.chromatin remodeling...	0.01	OrthoFinder output from all 47 species
AT2G13370	CHR5	chromatin remodeling 5	0.03	OrthoFinder output from all 47 species
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.04	OrthoFinder output from all 47 species
AT3G06010	ATCHR12	Homeotic gene regulator	0.02	OrthoFinder output from all 47 species
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.03	OrthoFinder output from all 47 species
Adi_g011986	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Adi_g104730	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g107421	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02726	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ala_g11507	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Ala_g17670	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ala_g27421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g56902	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.06	OrthoFinder output from all 47 species
Aob_g29249	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ceric.03G025400.1	PKL, GYM, CHR6,...	not classified & original description: pacid=50572032...	0.03	OrthoFinder output from all 47 species
Ceric.10G020300.1	CHR5, Ceric.10G020300	component *(CHR5) of SAGA transcription co-activator...	0.06	OrthoFinder output from all 47 species
Ceric.1Z205000.1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ceric.36G015700.1	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ceric.37G008600.1	SYD, CHR3,...	SMARCA component *(SYD/BRM/MINU) & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Cre03.g179300	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Dcu_g03207	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Dde_g10991	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
GSVIVT01017820001	SYD, CHR3	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01037235001	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Gb_27153	ATCHR12	chromatin remodeling factor (Snf2)	0.04	OrthoFinder output from all 47 species
Len_g01407	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Len_g35371	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g06769	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Lfl_g30624	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.06	OrthoFinder output from all 47 species
MA_102992g0020	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.03	OrthoFinder output from all 47 species
Mp1g05480.1	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	OrthoFinder output from all 47 species
Mp5g24460.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Msp_g13206	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Msp_g14766	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g16130	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g18803	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g25685	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g26259	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29874	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ppi_g32094	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g29220	No alias	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Sam_g36172	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc11g062010.3.1	SYD, CHR3, Solyc11g062010	chromatin remodeling factor (Snf2)	0.04	OrthoFinder output from all 47 species
Spa_g17788	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g13484	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e030969_P003	SYD, CHR3, Zm00001e030969	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	14	53
IPR000330	SNF2_N	113	399

External Links

No external refs found!

Aspi01Gene52539.t1 (PKL, GYM, CHR6, SSL2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation