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  5. Aev_g34996

Aev_g34996 (YCF3)


Aliases : YCF3

Description : protein involved in PS-I assembly *(YCF3) & original description: none


Gene families : OG0006366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g34996
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
ATCG00360 YCF3 Tetratricopeptide repeat (TPR)-like superfamily protein 0.17 OrthoFinder output from all 47 species
Ala_g19904 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.03 OrthoFinder output from all 47 species
Als_g33718 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.08 OrthoFinder output from all 47 species
Cba_g70304 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.12 OrthoFinder output from all 47 species
Ceric.02G013500.1 YCF3, Ceric.02G013500 protein involved in PS-I assembly *(YCF3) & original... 0.12 OrthoFinder output from all 47 species
Ceric.09G047900.1 YCF3, Ceric.09G047900 protein involved in PS-I assembly *(YCF3) & original... 0.19 OrthoFinder output from all 47 species
Ceric.1Z022600.1 YCF3, Ceric.1Z022600 protein involved in PS-I assembly *(YCF3) & original... 0.35 OrthoFinder output from all 47 species
Ceric.1Z161500.1 YCF3, Ceric.1Z161500 not classified & original description: pacid=50596948... 0.08 OrthoFinder output from all 47 species
Ceric.26G038300.1 YCF3, Ceric.26G038300 not classified & original description: pacid=50599550... 0.32 OrthoFinder output from all 47 species
Ceric.28G030600.1 YCF3, Ceric.28G030600 not classified & original description: pacid=50569577... 0.09 OrthoFinder output from all 47 species
Ceric.29G032800.1 YCF3, Ceric.29G032800 protein involved in PS-I assembly *(YCF3) & original... 0.35 OrthoFinder output from all 47 species
Ceric.31G008800.1 Ceric.31G008800 not classified & original description: pacid=50574640... 0.13 OrthoFinder output from all 47 species
Ceric.33G023800.1 YCF3, Ceric.33G023800 protein involved in PS-I assembly *(YCF3) & original... 0.09 OrthoFinder output from all 47 species
GSVIVT01016018001 No alias Photosystem I assembly protein Ycf3 OS=Nicotiana tabacum 0.07 OrthoFinder output from all 47 species
LOC_Os01g57966.1 YCF3, LOC_Os01g57966 YCF3 protein involved in PS-I assembly 0.43 OrthoFinder output from all 47 species
LOC_Os04g16736.1 YCF3, LOC_Os04g16736 YCF3 protein involved in PS-I assembly 0.43 OrthoFinder output from all 47 species
LOC_Os04g16762.1 YCF3, LOC_Os04g16762 YCF3 protein involved in PS-I assembly 0.18 OrthoFinder output from all 47 species
LOC_Os10g21254.1 YCF3, LOC_Os10g21254 YCF3 protein involved in PS-I assembly 0.43 OrthoFinder output from all 47 species
LOC_Os10g38216.1 YCF3, LOC_Os10g38216 YCF3 protein involved in PS-I assembly 0.43 OrthoFinder output from all 47 species
Lfl_g14015 YCF3 not classified & original description: none 0.24 OrthoFinder output from all 47 species
Lfl_g19607 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.32 OrthoFinder output from all 47 species
Mp3g09610.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g20105 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.13 OrthoFinder output from all 47 species
Pir_g08805 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.22 OrthoFinder output from all 47 species
Sam_g21679 No alias protein involved in PS-I assembly *(YCF3) & original... 0.13 OrthoFinder output from all 47 species
Solyc00g500058.1.1 YCF3, Solyc00g500058 YCF3 protein involved in PS-I assembly 0.19 OrthoFinder output from all 47 species
Solyc00g500059.1.1 Solyc00g500059 Photosystem I assembly protein Ycf3 OS=Solanum... 0.23 OrthoFinder output from all 47 species
Solyc00g500144.1.1 Solyc00g500144 Photosystem I assembly protein Ycf3 OS=Solanum... 0.23 OrthoFinder output from all 47 species
Solyc00g500210.1.1 YCF3, Solyc00g500210 YCF3 protein involved in PS-I assembly 0.19 OrthoFinder output from all 47 species
Solyc00g500211.1.1 Solyc00g500211 Photosystem I assembly protein Ycf3 OS=Solanum... 0.23 OrthoFinder output from all 47 species
Solyc09g015280.1.1 YCF3, Solyc09g015280 Photosystem I assembly protein Ycf3 OS=Solanum... 0.17 OrthoFinder output from all 47 species
Solyc09g015320.3.1 PSAA, Solyc09g015320 Photosystem I P700 chlorophyll a apoprotein A1... 0.28 OrthoFinder output from all 47 species
Spa_g00949 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001440 TPR_1 73 104
No external refs found!