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  5. Aspi01Gene50700.t2

Aspi01Gene50700.t2 (PKR1, CHR4, Aspi01Gene50700)


Aliases : PKR1, CHR4, Aspi01Gene50700

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene50700.t2
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00173840 CHR17,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene62384.t3 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
GSVIVT01035901001 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Lfl_g04300 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13222 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g52065 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07635 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Sam_g22507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21583 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Spa_g24876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g36192 CHR11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45964 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009463 DUF1087 1453 1496
IPR023780 Chromo_domain 759 807
IPR001650 Helicase_C 1164 1276
IPR000330 SNF2_N 865 1139
IPR000313 PWWP_dom 113 208
IPR001005 SANT/Myb 1860 1906
IPR019787 Znf_PHD-finger 344 387
No external refs found!