Aspi01Gene47132.t1 (SYD, CHR3, Aspi01Gene47132)

Aliases : SYD, CHR3, Aspi01Gene47132

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene47132.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00086p00165640	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
AMTR_s00090p00148990	SYD, CHR3,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
AT2G13370	CHR5	chromatin remodeling 5	0.03	OrthoFinder output from all 47 species
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.04	OrthoFinder output from all 47 species
AT3G06010	ATCHR12	Homeotic gene regulator	0.02	OrthoFinder output from all 47 species
Adi_g004816	SYD, CHR3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g011955	SYD, CHR3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g058025	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g078005	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107365	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aev_g13876	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aev_g41954	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Ala_g02726	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Ala_g06279	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Ala_g17670	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Ala_g27421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g36219	ATCHR12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18378	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Aob_g29989	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Aop_g13607	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aspi01Gene14150.t2	CHR11, Aspi01Gene14150	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene24030.t1	CHR5, Aspi01Gene24030	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Aspi01Gene47130.t1	SYD, CHR3,...	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene52538.t1	PKL, GYM, CHR6,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene62384.t1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene62384.t3	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.07	OrthoFinder output from all 47 species
Aspi01Gene70267.t2	Aspi01Gene70267	chromatin remodeling factor *(ALC1) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g02115	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Cba_g06040	CHR5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g06827	PKR1, CHR4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.10	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Cre09.g390000	CHR17	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	OrthoFinder output from all 47 species
Dde_g03505	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01012117001	PKR1, CHR4	RNA biosynthesis.transcriptional activation.PHD finger...	0.03	OrthoFinder output from all 47 species
GSVIVT01017820001	SYD, CHR3	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Gb_16961	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
Lfl_g04300	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g06769	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
MA_10429361g0010	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.05	OrthoFinder output from all 47 species
Mp1g05480.1	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	OrthoFinder output from all 47 species
Mp4g00040.1	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
Nbi_g12025	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g18803	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Pir_g03102	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16726	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Pir_g52065	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04716	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.06	OrthoFinder output from all 47 species
Ppi_g07635	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002414	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018691	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018707	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g14615	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16204	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g29292	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Sam_g36172	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Smo177985	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Solyc11g062010.3.1	SYD, CHR3, Solyc11g062010	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species
Spa_g36192	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g45964	CHR11	not classified & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	1697	1897

External Links

No external refs found!

Aspi01Gene47132.t1 (SYD, CHR3, Aspi01Gene47132)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation