Aspi01Gene46934.t1 (SNL3, ATSIN3, SIN3,...)

Aliases : SNL3, ATSIN3, SIN3, Aspi01Gene46934

Description : component *(SNL) of histone deacetylase machineries & original description: none

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene46934.t1

Target	Alias	Description	ECC score	Gene Family Method
AT3G01320	SNL1	SIN3-like 1	0.05	OrthoFinder output from all 47 species
AT5G15020	SNL2	SIN3-like 2	0.03	OrthoFinder output from all 47 species
Adi_g013447	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ala_g17667	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ala_g21578	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Als_g05295	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g52097	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aob_g29157	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Cba_g16029	SNL4	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g77516	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ceric.31G072300.1	SNL4, Ceric.31G072300	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.28	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 1...	0.02	OrthoFinder output from all 47 species
Dcu_g18942	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.04	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.06	OrthoFinder output from all 47 species
Len_g04844	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Len_g20482	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Mp7g11300.1	SNL5	Paired amphipathic helix protein Sin3-like 2...	0.02	OrthoFinder output from all 47 species
Msp_g39361	SNL6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01419	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g14557	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Solyc02g067570.3.1	SNL2, Solyc02g067570	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Solyc02g087360.4.1	SNL2, Solyc02g087360	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR031693	Sin3_C	1128	1376
IPR013194	HDAC_interact_dom	496	586
IPR003822	PAH	147	191
IPR003822	PAH	63	106
IPR003822	PAH	362	406

External Links

No external refs found!

Aspi01Gene46934.t1 (SNL3, ATSIN3, SIN3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation