AMTR_s00111p00031560


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Alc chromatin remodeling factor


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0008796 (LandPlants) Phylogenetic Tree(s): OG_02_0008796_tree ,
OG_03_0009569 (SeedPlants) Phylogenetic Tree(s): OG_03_0009569_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00111p00031560
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.188 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000691.35 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00000989.25 No alias CHD3-type chromatin-remodeling factor CHR7... 0.03 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
MA_102992g0010 No alias Probable chromatin-remodeling complex ATPase chain... 0.03 Archaeplastida
Mp1g07380.1 No alias CHD3-type chromatin-remodeling factor CHR7... 0.02 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc10g011940.1.1 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 406 496
IPR000330 SNF2_dom 1 353
No external refs found!