Pp3c26_11550V3.1


Description : auxin response factor 6


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000516 (LandPlants) Phylogenetic Tree(s): OG_02_0000516_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c26_11550V3.1
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AMTR_s00211p00025860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 Archaeplastida
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 Archaeplastida
Cpa|evm.model.tig00020904.93 No alias No description available 0.02 Archaeplastida
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Gb_17830 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 Archaeplastida
Pp3c6_21370V3.1 No alias auxin response factor 2 0.02 Archaeplastida
Smo117217 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Smo181406 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Solyc01g096070.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc05g056040.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc06g075150.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc09g007810.4.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e004554_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e013639_P001 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e017798_P003 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e030325_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e032135_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e032423_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 LandPlants
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 LandPlants
Mp1g12750.1 No alias transcription factor (ARF) 0.03 LandPlants
Smo117217 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
Zm00001e003229_P002 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e006577_P003 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e018126_P002 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e030325_P003 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e041866_P001 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e041910_P003 No alias transcription factor (ARF) 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 259 342
IPR003340 B3_DNA-bd 133 234
No external refs found!