Aspi01Gene45156.t1 (Aspi01Gene45156)

Aliases : Aspi01Gene45156

Description : plant-specific E3 ubiquitin ligase *(RSL/RFA) & original description: none

Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene45156.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00129p00118770	evm_27.TU.AmTr_v1...	Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT5G07640	No alias	RING/U-box superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g000876	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g110080.2.1	Solyc01g110080	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.03	OrthoFinder output from all 47 species
Solyc01g110090.1.1	Solyc01g110090	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc04g077000.3.1	Solyc04g077000	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.03	OrthoFinder output from all 47 species
Zm00001e005994_P001	Zm00001e005994	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002867	IBR_dom	139	212
IPR002867	IBR_dom	232	281
IPR000571	Znf_CCCH	345	368

External Links

No external refs found!