Aspi01Gene44328.t1 (PUB23, Aspi01Gene44328)

Aliases : PUB23, Aspi01Gene44328

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene44328.t1

Target	Alias	Description	ECC score	Gene Family Method
AT3G52450	PUB22	plant U-box 22	0.04	OrthoFinder output from all 47 species
Adi_g054744	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g12715	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20934	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18467.t1	PUB23, Aspi01Gene18467	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene35689.t1	PUB25, Aspi01Gene35689	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene43215.t1	PUB24, Aspi01Gene43215	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene51615.t1	PUB15, Aspi01Gene51615	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene56365.t1	PUB25, Aspi01Gene56365	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0084.g038964	PUB25	U-Box-group-III E3 ubiquitin ligase & original...	0.04	OrthoFinder output from all 47 species
Cba_g38190	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G004600.1	PUB26, Ceric.07G004600	E3 ubiquitin ligase & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.27G047700.1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g08418	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g07421	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g18954	PUB25	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g26825	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01026542001	CMPG2, ATCMPG2	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01026764001	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_17119	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os01g64570.1	PUB23, LOC_Os01g64570	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os02g46500.1	PUB23, LOC_Os02g46500	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os04g58920.1	PUB23, LOC_Os04g58920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os10g03440.1	LOC_Os10g03440	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os12g06410.1	PUB24, LOC_Os12g06410	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Lfl_g24284	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10430196g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10432179g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10433846g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_126399g0010	PUB26	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_1663g0020	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_17715g0010	CMPG1, ATCMPG1	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_311559g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_33190g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_415344g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_684442g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_779502g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ppi_g32476	PUB25	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g42738	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g57248	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g15094	PUB26	E3 ubiquiTin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e007109_P001	PUB23, Zm00001e007109	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e008167_P001	PUB23, Zm00001e008167	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	85

External Links

No external refs found!

Aspi01Gene44328.t1 (PUB23, Aspi01Gene44328)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation