Aspi01Gene44326.t1 (PUB23, Aspi01Gene44326)

Aliases : PUB23, Aspi01Gene44326

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene44326.t1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AT3G02840	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G11840	PUB24	plant U-box 24	0.03	OrthoFinder output from all 47 species
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.03	OrthoFinder output from all 47 species
Als_g28879	PUB26	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Als_g62359	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01235	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g20185	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene39077.t2	Aspi01Gene39077	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g56658	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16356	PUB22	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01026764001	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Len_g16219	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g31416	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g24284	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10432981g0010	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_17715g0010	CMPG1, ATCMPG1	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Nbi_g09373	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g34239	No alias	E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g12004	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g04485	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g15131	No alias	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Smo172230	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo416356	PUB26	U-box domain-containing protein 30 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc01g007000.4.1	PUB22, Solyc01g007000	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007010.2.1	PUB22, Solyc01g007010	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007020.4.1	PUB23, Solyc01g007020	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007040.4.1	PUB22, Solyc01g007040	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007050.3.1	PUB24, Solyc01g007050	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g008100.3.1	Solyc04g008100	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g006030.1.1	Solyc11g006030	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Tin_g15093	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015763_P001	Zm00001e015763	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	85

External Links

No external refs found!

Aspi01Gene44326.t1 (PUB23, Aspi01Gene44326)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation