AMTR_s00110p00142760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.117

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor


Gene families : OG_01_0004888 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004888_tree ,
OG_02_0003570 (LandPlants) Phylogenetic Tree(s): OG_02_0003570_tree ,
OG_03_0003926 (SeedPlants) Phylogenetic Tree(s): OG_03_0003926_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00142760
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AT1G30010 No alias Intron maturase, type II family protein 0.03 Archaeplastida
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
Pp3c26_11300V3.1 No alias Intron maturase, type II family protein 0.02 Archaeplastida
Solyc08g077385.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 Archaeplastida
Zm00001e011594_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
AT1G30010 No alias Intron maturase, type II family protein 0.02 LandPlants
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.04 LandPlants
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 LandPlants
LOC_Os10g41790.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 LandPlants
Pp3c26_11300V3.1 No alias Intron maturase, type II family protein 0.02 LandPlants
Solyc08g077385.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 LandPlants
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 LandPlants
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 LandPlants
Zm00001e011594_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 LandPlants
AT1G30010 No alias Intron maturase, type II family protein 0.02 SeedPlants
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.04 SeedPlants
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
LOC_Os10g41790.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
Solyc08g077385.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 SeedPlants
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
Zm00001e011594_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003964 RNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006278 RNA-dependent DNA biosynthetic process IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR024937 Domain_X 472 581
IPR000477 RT_dom 159 438
No external refs found!