Aspi01Gene43215.t1 (PUB24, Aspi01Gene43215)

Aliases : PUB24, Aspi01Gene43215

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene43215.t1
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00030p00130440	CMPG2, ATCMPG2,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
AT3G02840	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G18710	PUB29, ATPUB29	plant U-box 29	0.03	OrthoFinder output from all 47 species
AT3G19380	PUB25	plant U-box 25	0.04	OrthoFinder output from all 47 species
AT3G52450	PUB22	plant U-box 22	0.06	OrthoFinder output from all 47 species
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.06	OrthoFinder output from all 47 species
Adi_g003285	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g077173	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g02169	PUB23	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g02974	PUB23	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g18167	PUB26	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g21197	PUB25	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g38062	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02187	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06990	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g20026	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g12715	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
Als_g28879	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30969	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g37093	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g52007	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g57047	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g62359	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g12417	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g16033	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g18761	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15171.t1	PUB29, ATPUB29,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene18444.t1	PUB23, Aspi01Gene18444	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene18451.t1	PUB25, Aspi01Gene18451	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18452.t1	PUB25, Aspi01Gene18452	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene18453.t1	PUB25, Aspi01Gene18453	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene18467.t1	PUB23, Aspi01Gene18467	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene19337.t1	PUB26, Aspi01Gene19337	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene19351.t1	Aspi01Gene19351	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene19355.t1	PUB26, Aspi01Gene19355	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Aspi01Gene44311.t1	PUB22, Aspi01Gene44311	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44314.t1	PUB23, Aspi01Gene44314	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44315.t1	PUB23, Aspi01Gene44315	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44316.t1	PUB23, Aspi01Gene44316	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44317.t1	PUB23, Aspi01Gene44317	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44318.t1	PUB23, Aspi01Gene44318	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44321.t1	PUB23, Aspi01Gene44321	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44328.t1	PUB23, Aspi01Gene44328	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene51624.t1	PUB15, Aspi01Gene51624	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.08G042000.1	Ceric.08G042000	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.10G007700.1	PUB23, Ceric.10G007700	not classified & original description: pacid=50612519...	0.03	OrthoFinder output from all 47 species
Ceric.19G059800.1	PUB26, Ceric.19G059800	not classified & original description: pacid=50575490...	0.04	OrthoFinder output from all 47 species
Ceric.21G081600.1	PUB26, Ceric.21G081600	U-Box-group-III E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Dcu_g07421	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g11691	PUB26	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g03660	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01026764001	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_02635	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_11650	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g64570.1	PUB23, LOC_Os01g64570	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
LOC_Os02g33680.1	CMPG2, ATCMPG2,...	U-box domain-containing protein 29 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os02g34410.1	PUB25, LOC_Os02g34410	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os03g13740.1	LOC_Os03g13740	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os04g34030.1	PUB23, LOC_Os04g34030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os06g13870.1	LOC_Os06g13870	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os12g06410.1	PUB24, LOC_Os12g06410	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10432179g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10432813g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_1663g0020	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_17715g0010	CMPG1, ATCMPG1	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_311559g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_33190g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_48004g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_481299g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_5536318g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_58844g0020	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_684442g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_779502g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_83739g0020	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_95906g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp3g11730.1	PUB25	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Mp3g22750.1	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp7g11000.1	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Mp7g11020.1	PUB25	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Nbi_g09512	PUB29, ATPUB29	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g08919	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g08920	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g08921	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g29206	PUB25	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g33878	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g33879	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g36530	PUB23	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g37565	PUB26	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42463	PUB23	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g12470	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g34239	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g19356	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g27483	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32476	PUB25	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g42738	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717	PUB26	not classified & original description: CDS=1-1404	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011093	PUB23	not classified & original description: CDS=1-1278	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015794	PUB26	U-Box-group-III E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Smo416356	PUB26	U-box domain-containing protein 30 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc01g007010.2.1	PUB22, Solyc01g007010	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc01g007020.4.1	PUB23, Solyc01g007020	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007040.4.1	PUB22, Solyc01g007040	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc01g107980.3.1	PUB26, Solyc01g107980	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc04g008100.3.1	Solyc04g008100	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Solyc06g074140.1.1	PUB24, Solyc06g074140	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc11g068940.1.1	PUB24, Solyc11g068940	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e006484_P001	PUB23, Zm00001e006484	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e007109_P001	PUB23, Zm00001e007109	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e008167_P001	PUB23, Zm00001e008167	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e014766_P001	CMPG2, ATCMPG2,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Zm00001e022679_P001	CMPG2, ATCMPG2,...	U-box domain-containing protein 29 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e022698_P001	PUB26, Zm00001e022698	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036030_P001	Zm00001e036030	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e039417_P001	PUB23, Zm00001e039417	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	14	87

External Links

No external refs found!

Aspi01Gene43215.t1 (PUB24, Aspi01Gene43215)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation