Solyc01g108410.2.1 (Solyc01g108410.2)


Aliases : Solyc01g108410.2

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2745 (EMB2745)


Gene families : OG_01_0001103 (Gene family) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g108410.2.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Zm00001d045319 GRMZM2G003742 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0043565 sequence-specific DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 622 669
IPR002885 Pentatricopeptide_repeat 307 348
IPR002885 Pentatricopeptide_repeat 377 426
IPR002885 Pentatricopeptide_repeat 482 531
IPR002885 Pentatricopeptide_repeat 236 285
IPR002885 Pentatricopeptide_repeat 552 600
IPR000679 Znf_GATA 933 960
IPR002885 Pentatricopeptide_repeat 443 475
IPR002885 Pentatricopeptide_repeat 706 735
IPR002885 Pentatricopeptide_repeat 680 703
No external refs found!