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  5. Aspi01Gene42452.t1

Aspi01Gene42452.t1 (Aspi01Gene42452)


Aliases : Aspi01Gene42452

Description : histone H3 variant *(CENH3) & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene42452.t1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
AT1G09200 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G13370 No alias Histone superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G27360 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G10390 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G10400 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65360 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g12785 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g30174 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19848 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0109.g045300 No alias histone H3 variant *(CENH3) & original description: CDS=340-828 0.03 OrthoFinder output from all 47 species
Cba_g02423 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G051000.1 Ceric.14G051000 histone *(H3) & original description: pacid=50634481... 0.01 OrthoFinder output from all 47 species
Ceric.14G051800.1 Ceric.14G051800 not classified & original description: pacid=50634871... 0.03 OrthoFinder output from all 47 species
Ceric.22G049100.1 Ceric.22G049100 histone H3 variant *(CENH3) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.27G029000.1 Ceric.27G029000 histone *(H3) & original description: pacid=50605580... 0.01 OrthoFinder output from all 47 species
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.02 OrthoFinder output from all 47 species
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Dac_g01991 No alias histone H3 variant *(CENH3) & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g12416 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g27747 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31882 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.05 OrthoFinder output from all 47 species
Gb_27618 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Gb_29026 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Gb_29027 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Gb_30564 No alias histone (H3) 0.01 OrthoFinder output from all 47 species
LOC_Os01g64640.1 LOC_Os01g64640 histone (H3) 0.02 OrthoFinder output from all 47 species
LOC_Os05g36280.1 LOC_Os05g36280 histone (H3) 0.02 OrthoFinder output from all 47 species
LOC_Os05g41080.1 LOC_Os05g41080 histone H3 variant (CENH3) 0.02 OrthoFinder output from all 47 species
LOC_Os06g06510.1 LOC_Os06g06510 histone (H3) 0.04 OrthoFinder output from all 47 species
Len_g04468 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g05015 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g26206 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
MA_113838g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_17527g0010 No alias histone (H3) 0.01 OrthoFinder output from all 47 species
MA_197719g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_56411g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g10700.1 No alias histone (H3) 0.01 OrthoFinder output from all 47 species
Mp7g16200.1 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Msp_g36081 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01691 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05547 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06293 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11156 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60005 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005529 No alias not classified & original description: CDS=1-426 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007202 No alias not classified & original description: CDS=224-661 0.04 OrthoFinder output from all 47 species
Sam_g20165 No alias histone H3 variant *(CENH3) & original description: none 0.04 OrthoFinder output from all 47 species
Smo438193 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Solyc01g074000.3.1 Solyc01g074000 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.06 OrthoFinder output from all 47 species
Solyc01g080600.4.1 Solyc01g080600 histone (H3) 0.05 OrthoFinder output from all 47 species
Solyc01g086820.4.1 Solyc01g086820 histone (H3) 0.05 OrthoFinder output from all 47 species
Solyc02g077480.1.1 Solyc02g077480 histone (H3) 0.06 OrthoFinder output from all 47 species
Solyc10g008910.1.1 Solyc10g008910 histone (H3) 0.02 OrthoFinder output from all 47 species
Solyc12g056540.1.1 Solyc12g056540 histone (H3) 0.02 OrthoFinder output from all 47 species
Spa_g18210 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g33395 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42522 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g46951 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52114 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g52464 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56118 No alias histone *(H3) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09717 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008160_P001 Zm00001e008160 histone (H3) 0.05 OrthoFinder output from all 47 species
Zm00001e016861_P001 Zm00001e016861 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e018263_P001 Zm00001e018263 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e040856_P001 Zm00001e040856 histone (H3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 26 149
No external refs found!