Aspi01Gene40552.t1 (PGP1, ABCB1, ATPGP1,...)


Aliases : PGP1, ABCB1, ATPGP1, Aspi01Gene40552

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene40552.t1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00046670 PGP2,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00056p00132920 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00076p00195870 PGP1, ABCB1,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00090p00165440 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00145p00075460 PGP20,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT1G27940 PGP13 P-glycoprotein 13 0.03 OrthoFinder output from all 47 species
AT2G36910 PGP1, ABCB1, ATPGP1 ATP binding cassette subfamily B1 0.02 OrthoFinder output from all 47 species
AT2G39480 PGP6 P-glycoprotein 6 0.03 OrthoFinder output from all 47 species
AT3G28860 ABCB19,... ATP binding cassette subfamily B19 0.03 OrthoFinder output from all 47 species
Adi_g014378 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08469.t1 PGP11, Aspi01Gene08469 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0010.g012029 ABCB19,... subfamily ABCB transporter & original description: CDS=121-4035 0.05 OrthoFinder output from all 47 species
Azfi_s0230.g059155 No alias not classified & original description: CDS=1-966 0.01 OrthoFinder output from all 47 species
Azfi_s2496.g111845 ABCB19,... subfamily ABCB transporter & original description: CDS=142-3066 0.05 OrthoFinder output from all 47 species
Cba_g59935 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08692 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01038687001 ABCB19,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Gb_31652 PGP6 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g50160.1 PGP11, LOC_Os01g50160 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os08g45030.1 PGP1, ABCB1,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Lfl_g10739 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
MA_18863g0010 PGP11 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_82945g0030 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
MA_93218g0010 PGP11 ABC transporter B family member 4 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Nbi_g07933 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33236 ABCB19,... ABC-B-type transporter *(AMN3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35743 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38163 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04001 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153 PGP11 subfamily ABCB transporter & original description: CDS=261-4235 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646 PGP20 subfamily ABCB transporter & original description: CDS=24-3872 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012919 ABCB19,... subfamily ABCB transporter & original description: CDS=118-4143 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905 PGP11 not classified & original description: CDS=139-861 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022750 PGP11 subfamily ABCB transporter & original description: CDS=1-3756 0.04 OrthoFinder output from all 47 species
Smo169182 ATPGP4, PGP4, ABCB4, MDR4 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
Spa_g21974 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26470 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 936 1203
IPR011527 ABC1_TM_dom 335 540
IPR003439 ABC_transporter-like_ATP-bd 1272 1420
IPR003439 ABC_transporter-like_ATP-bd 613 762
No external refs found!