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  5. Aspi01Gene40442.t1

Aspi01Gene40442.t1 (Aspi01Gene40442)


Aliases : Aspi01Gene40442

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene40442.t1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00246970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g036795 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40270 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008511 No alias not classified & original description: CDS=1-792 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g031009 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2424 0.03 OrthoFinder output from all 47 species
Azfi_s0112.g045771 No alias not classified & original description: CDS=1-2433 0.03 OrthoFinder output from all 47 species
Azfi_s0485.g073410 No alias not classified & original description: CDS=1-1641 0.04 OrthoFinder output from all 47 species
Ceric.34G043400.1 Ceric.34G043400 not classified & original description: pacid=50623137... 0.04 OrthoFinder output from all 47 species
Dac_g23318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35673 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13218 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g40646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_107723g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_124907g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_480955g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61267 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007241 No alias protein S-acyltransferase *(PAT22) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021374 No alias not classified & original description: CDS=1-1881 0.03 OrthoFinder output from all 47 species
Sam_g13666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo119202 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Smo81625 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Solyc01g081560.2.1 Solyc01g081560 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Spa_g21519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 97 145
IPR002885 Pentatricopeptide_repeat 603 649
IPR002885 Pentatricopeptide_repeat 300 346
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 198 246
IPR002885 Pentatricopeptide_repeat 500 547
IPR002885 Pentatricopeptide_repeat 677 703
IPR002885 Pentatricopeptide_repeat 576 596
IPR002885 Pentatricopeptide_repeat 173 194
No external refs found!