Solyc01g103080.3.1 (Solyc01g103080.3)


Aliases : Solyc01g103080.3

Description : 27.1 RNA.processing RNA helicase, ATP-dependent, SK12/DOB1 protein


Gene families : OG_01_0000859 (Gene family) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g103080.3.1
Cluster HCCA cluster: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Gene family
AT3G46960 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Gene family
Cpa|evm.model.tig00020723.108 No alias 27.1 RNA.processing RNA helicase, ATP-dependent,... 0.03 Gene family
Cre02.g117900 No alias 27.1 RNA.processing RNA helicase, ATP-dependent,... 0.02 Gene family
Cre06.g289950 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.02 Gene family
GSVIVT01024809001 No alias 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.04 Gene family
GSVIVT01032255001 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.05 Gene family
GSVIVT01037437001 No alias 27.1 RNA.processing RNA helicase, ATP-dependent,... 0.06 Gene family
LOC_Os02g06500 Os02g0160000 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.02 Gene family
LOC_Os11g07500 Os11g0176200 29.2.2.3.5 protein.synthesis.ribosome... 0.04 Gene family
Smo174598 PACid_15418616 27.1 RNA.processing RNA helicase, ATP-dependent,... 0.03 Gene family
Smo403447 PACid_15407141 No description available 0.04 Gene family
Zm00001d015314 GRMZM2G024882 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012961 Ski2_C 817 986
IPR011545 DEAD/DEAH_box_helicase_dom 73 220
IPR025696 rRNA_proc-arch_dom 519 790
No external refs found!