Solyc01g103080.3.1 (Solyc01g103080.3)

Aliases : Solyc01g103080.3

Description : 27.1 RNA.processing RNA helicase, ATP-dependent, SK12/DOB1 protein

Gene families : OG_01_0000859 (Gene family) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc01g103080.3.1
Cluster	HCCA cluster: Cluster_285

Target	Alias	Description	ECC score	Gene Family Method
AT2G06990	HEN2	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.05	Gene family
AT3G46960	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	Gene family
Cpa\|evm.model.tig00020723.108	No alias	27.1 RNA.processing RNA helicase, ATP-dependent,...	0.03	Gene family
Cre02.g117900	No alias	27.1 RNA.processing RNA helicase, ATP-dependent,...	0.02	Gene family
Cre06.g289950	No alias	29.2.2.3.5 protein.synthesis.ribosome...	0.02	Gene family
GSVIVT01024809001	No alias	28.99 DNA.unspecified RNA helicase, ATP-dependent,...	0.04	Gene family
GSVIVT01032255001	No alias	29.2.2.3.5 protein.synthesis.ribosome...	0.05	Gene family
GSVIVT01037437001	No alias	27.1 RNA.processing RNA helicase, ATP-dependent,...	0.06	Gene family
LOC_Os02g06500	Os02g0160000	28.99 DNA.unspecified RNA helicase, ATP-dependent,...	0.02	Gene family
LOC_Os11g07500	Os11g0176200	29.2.2.3.5 protein.synthesis.ribosome...	0.04	Gene family
Smo174598	PACid_15418616	27.1 RNA.processing RNA helicase, ATP-dependent,...	0.03	Gene family
Smo403447	PACid_15407141	No description available	0.04	Gene family
Zm00001d015314	GRMZM2G024882	28.99 DNA.unspecified RNA helicase, ATP-dependent,...	0.04	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012961	Ski2_C	817	986
IPR011545	DEAD/DEAH_box_helicase_dom	73	220
IPR025696	rRNA_proc-arch_dom	519	790

External Links

No external refs found!