1. Home
  2. Species
  3. Alsophila spinulosa
  4. Sequence
  5. Aspi01Gene35126.t1

Aspi01Gene35126.t1 (AGO1, Aspi01Gene35126)


Aliases : AGO1, Aspi01Gene35126

Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene35126.t1

Target Alias Description ECC score Gene Family Method Actions
Adi_g049547 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113326 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Als_g07869 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04459 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11029 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Aop_g10666 AGO1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene29036.t1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01029383001 AGO1 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
LOC_Os07g16224.1 AGO9, LOC_Os07g16224 siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Len_g55540 AGO7, ZIP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03429 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.04 OrthoFinder output from all 47 species
Ore_g41760 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02415 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002271 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description:... 0.03 OrthoFinder output from all 47 species
Spa_g27914 AGO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g30174 AGO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029696_P001 AGO1, Zm00001e029696 RIS-Complex miRNA recruiting factor (AGO1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR014811 ArgoL1 475 525
IPR032472 ArgoL2 666 712
IPR032473 Argonaute_Mid_dom 723 799
IPR003165 Piwi 815 1134
IPR003100 PAZ_dom 549 656
IPR032474 Argonaute_N 331 465
No external refs found!