Aspi01Gene33378.t1 (Aspi01Gene33378)

Aliases : Aspi01Gene33378

Description : RNA helicase *(Brr2) & original description: none

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene33378.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00146400	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
AT5G61140	No alias	U5 small nuclear ribonucleoprotein helicase	0.07	OrthoFinder output from all 47 species
Adi_g117139	emb1507	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g04355	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g05344	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.1Z134800.1	Ceric.1Z134800	not classified & original description: pacid=50597112...	0.03	OrthoFinder output from all 47 species
Ceric.1Z263400.1	Ceric.1Z263400	RNA helicase *(Brr2) & original description:...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.29	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.01	OrthoFinder output from all 47 species
Dcu_g12406	No alias	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g19260	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04070	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007875001	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.06	OrthoFinder output from all 47 species
GSVIVT01010769001	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.03	OrthoFinder output from all 47 species
Gb_18049	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.08	OrthoFinder output from all 47 species
Gb_27895	emb1507	RNA helicase (Brr2)	0.04	OrthoFinder output from all 47 species
LOC_Os03g11470.1	LOC_Os03g11470	DExH-box ATP-dependent RNA helicase DExH14...	0.07	OrthoFinder output from all 47 species
Len_g08641	emb1507	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g21125	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g09106	No alias	RNA helicase *(Brr2) & original description: none	0.06	OrthoFinder output from all 47 species
MA_10429486g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_10434882g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_8113344g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_81219g0020	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.07	OrthoFinder output from all 47 species
MA_930633g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
Mp1g06890.1	emb1507	RNA helicase (Brr2)	0.02	OrthoFinder output from all 47 species
Mp7g00250.1	No alias	RNA helicase (Brr2)	0.04	OrthoFinder output from all 47 species
Msp_g15106	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Smo144158	emb1507	RNA processing.RNA splicing.spliceosome...	0.04	OrthoFinder output from all 47 species
Smo178863	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
Solyc06g069480.3.1	Solyc06g069480	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
Spa_g39786	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e035676_P001	emb1507, Zm00001e035676	RNA helicase (Brr2)	0.03	OrthoFinder output from all 47 species
Zm00001e038727_P001	Zm00001e038727	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	471	644
IPR004179	Sec63-dom	1082	1355

External Links

No external refs found!

Aspi01Gene33378.t1 (Aspi01Gene33378)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation