AMTR_s00110p00037960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.12

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor


Gene families : OG_01_0005923 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005923_tree ,
OG_02_0009245 (LandPlants) Phylogenetic Tree(s): OG_02_0009245_tree ,
OG_03_0010620 (SeedPlants) Phylogenetic Tree(s): OG_03_0010620_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00037960
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Gb_30392 No alias chromatin remodeling factor (SMARCAL1) 0.04 Archaeplastida
LOC_Os07g40730.1 No alias chromatin remodeling factor (SMARCAL1) 0.03 Archaeplastida
MA_10436787g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_30392 No alias chromatin remodeling factor (SMARCAL1) 0.03 LandPlants
LOC_Os07g40730.1 No alias chromatin remodeling factor (SMARCAL1) 0.02 LandPlants
MA_10436787g0010 No alias no hits & (original description: none) 0.01 LandPlants
Pp3c1_13300V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 LandPlants
Gb_30392 No alias chromatin remodeling factor (SMARCAL1) 0.03 SeedPlants
LOC_Os07g40730.1 No alias chromatin remodeling factor (SMARCAL1) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0004519 endonuclease activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 562 636
IPR002711 HNH 1054 1090
IPR000330 SNF2_dom 197 441
No external refs found!