Aspi01Gene32733.t2 (Aspi01Gene32733)

Aliases : Aspi01Gene32733

Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene32733.t2

Target	Alias	Description	ECC score	Gene Family Method
AT4G18465	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Aob_g19131	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Cre06.g266383	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g01933	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g03121	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g15088	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03086	No alias	RNA helicase *(Prp22) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g10443	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g06275	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g17882	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	604	680
IPR007502	Helicase-assoc_dom	454	542
IPR001650	Helicase_C	260	391
IPR011545	DEAD/DEAH_box_helicase_dom	61	213

External Links

No external refs found!