Aspi01Gene32665.t1 (SNL4, Aspi01Gene32665)

Aliases : SNL4, Aspi01Gene32665

Description : component *(SNL) of histone deacetylase machineries & original description: none

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene32665.t1

Target	Alias	Description	ECC score	Gene Family Method
AT1G10250	No alias	BEST Arabidopsis thaliana protein match is: SIN3-like 6...	0.03	OrthoFinder output from all 47 species
AT1G59890	SNL5	SIN3-like 5	0.03	OrthoFinder output from all 47 species
Adi_g088432	SNL3, ATSIN3, SIN3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g21578	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Aob_g29157	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Cba_g16029	SNL4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.02G103800.1	SNL4, Ceric.02G103800	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.28	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 1...	0.01	OrthoFinder output from all 47 species
Dde_g18720	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Ore_g28709	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30141	SNL2	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ppi_g01419	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g29972	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g35727	No alias	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Solyc02g067570.3.1	SNL2, Solyc02g067570	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR031693	Sin3_C	1035	1283
IPR013194	HDAC_interact_dom	474	566
IPR003822	PAH	332	376
IPR003822	PAH	58	101
IPR003822	PAH	140	183

External Links

No external refs found!

Aspi01Gene32665.t1 (SNL4, Aspi01Gene32665)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation