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  5. Aspi01Gene32543.t1

Aspi01Gene32543.t1 (Aspi01Gene32543)


Aliases : Aspi01Gene32543

Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene32543.t1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.02 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.02 OrthoFinder output from all 47 species
AMTR_s00147p00069920 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g023342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 OrthoFinder output from all 47 species
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.01 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.01 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.01 OrthoFinder output from all 47 species
LOC_Os03g11020.1 LOC_Os03g11020 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os03g55340.1 LOC_Os03g55340 Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
Lfl_g17941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29766 OTP43 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.01 OrthoFinder output from all 47 species
MA_83136g0010 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008361 No alias not classified & original description: CDS=1-1977 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014467 No alias not classified & original description: CDS=1-2058 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s2112.g028265 No alias not classified & original description: CDS=1-1269 0.04 OrthoFinder output from all 47 species
Smo126152 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.05 OrthoFinder output from all 47 species
Tin_g14951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.01 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 279 333
IPR002885 Pentatricopeptide_repeat 149 197
IPR002885 Pentatricopeptide_repeat 671 703
IPR002885 Pentatricopeptide_repeat 505 532
IPR002885 Pentatricopeptide_repeat 363 408
IPR002885 Pentatricopeptide_repeat 535 583
IPR002885 Pentatricopeptide_repeat 604 652
IPR002885 Pentatricopeptide_repeat 430 478
IPR002885 Pentatricopeptide_repeat 709 758
No external refs found!