Aspi01Gene31832.t1 (PUB13, ATPUB13,...)

Aliases : PUB13, ATPUB13, Aspi01Gene31832

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene31832.t1

Target	Alias	Description	ECC score	Gene Family Method
AT3G07360	PUB9, ATPUB9	plant U-box 9	0.03	OrthoFinder output from all 47 species
Adi_g102535	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04770	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g31832	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01960	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g23428	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g28208	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0497.g073607	PUB12, AtPUB12	not classified & original description: CDS=1-549	0.03	OrthoFinder output from all 47 species
Ceric.32G061700.1	Ceric.32G061700	not classified & original description: pacid=50598646...	0.03	OrthoFinder output from all 47 species
Dac_g35890	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g11164	PUB12, AtPUB12	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
GSVIVT01030205001	No alias	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_07614	PUB8, B80	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	OrthoFinder output from all 47 species
Len_g14585	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Len_g15239	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_106718g0010	PUB9, ATPUB9	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g24581	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02363	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02927	PUB14, ATPUB14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g14332	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g096460.2.1	Solyc01g096460	U-box domain-containing protein 4 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Zm00001e018578_P001	Zm00001e018578	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e023475_P001	Zm00001e023475	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	256	325
IPR000225	Armadillo	466	504
IPR000225	Armadillo	425	463
IPR000225	Armadillo	383	422

External Links

No external refs found!

Aspi01Gene31832.t1 (PUB13, ATPUB13,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation