Solyc01g095650.3.1 (Solyc01g095650.3)


Aliases : Solyc01g095650.3

Description : 28.1 DNA.synthesis/chromatin structure Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. HTR12


Gene families : OG_01_0000050 (Gene family) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g095650.3.1
Cluster HCCA cluster: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G09200 No alias Histone superfamily protein 0.06 Gene family
AT3G27360 No alias Histone superfamily protein 0.05 Gene family
AT4G40040 No alias Histone superfamily protein 0.04 Gene family
AT5G10390 No alias Histone superfamily protein 0.04 Gene family
AT5G10400 No alias Histone superfamily protein 0.05 Gene family
AT5G65360 No alias Histone superfamily protein 0.06 Gene family
Cre02.g104800 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.01 Gene family
Cre16.g661450 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.02 Gene family
GSVIVT01025316001 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.05 Gene family
GSVIVT01025318001 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.03 Gene family
GSVIVT01027073001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.09 Gene family
GSVIVT01032047001 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.07 Gene family
GSVIVT01034510001 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.03 Gene family
LOC_Os01g64640 Os01g0866200 28.1.3.2.3 DNA.synthesis/chromatin... 0.04 Gene family
LOC_Os04g34240 Os04g0419600 28.1.3.2.3 DNA.synthesis/chromatin... 0.04 Gene family
LOC_Os05g36280 Os05g0438700 28.1.3.2.3 DNA.synthesis/chromatin... 0.05 Gene family
LOC_Os05g41080 Os05g0489800 28.1.3.2.3 DNA.synthesis/chromatin... 0.06 Gene family
LOC_Os06g06460 Os06g0159450 28.1.3.2.3 DNA.synthesis/chromatin... 0.05 Gene family
LOC_Os11g05730 Os11g0155900 28.1.3.2.3 DNA.synthesis/chromatin... 0.04 Gene family
Zm00001d003730 GRMZM5G864735 28.1.3.2.3 DNA.synthesis/chromatin... 0.03 Gene family
Zm00001d012276 No alias 28.1.3.2.3 DNA.synthesis/chromatin... 0.04 Gene family
Zm00001d016723 GRMZM2G451254 28.1.3.2.3 DNA.synthesis/chromatin... 0.03 Gene family
Zm00001d025406 GRMZM2G355773 28.1.3.2.3 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d036250 GRMZM2G376957 28.1.3.2.3 DNA.synthesis/chromatin... 0.05 Gene family
Zm00001d039790 GRMZM2G401581 28.1.3.2.3 DNA.synthesis/chromatin... 0.03 Gene family
Zm00001d042730 GRMZM2G078314 28.1.3.2.3 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d050697 GRMZM2G418258 28.1.3.2.3 DNA.synthesis/chromatin... 0.04 Gene family

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 156 215
IPR007125 Histone_H2A/H2B/H3 1 78
No external refs found!