Aspi01Gene29721.t2 (HSS, ARF1-BP, ARF2,...)


Aliases : HSS, ARF1-BP, ARF2, ORE14, Aspi01Gene29721

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene29721.t2
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00034p00110140 ARF4 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00148p00046020 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Adi_g001040 ARF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058500 ARF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g070345 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g02260 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06737 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.01 OrthoFinder output from all 47 species
Azfi_s0065.g035934 No alias not classified & original description: CDS=1-342 0.01 OrthoFinder output from all 47 species
Azfi_s0934.g093100 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g27461 ARF6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os06g48950.1 ARF19, IAA22,... transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Lfl_g07818 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_92651g0010 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Ppi_g15721 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g037530.3.1 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc04g081240.2.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e032423_P002 ARF3, ETT, Zm00001e032423 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 ARF_dom 362 444
IPR033389 AUX/IAA_dom 773 873
IPR003340 B3_DNA-bd 237 338
No external refs found!