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  5. Aspi01Gene29180.t1

Aspi01Gene29180.t1 (AGO1, Aspi01Gene29180)


Aliases : AGO1, Aspi01Gene29180

Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene29180.t1

Target Alias Description ECC score Gene Family Method Actions
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 OrthoFinder output from all 47 species
AT5G21150 AGO9 Argonaute family protein 0.03 OrthoFinder output from all 47 species
Adi_g049547 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14664 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Aspi01Gene61220.t1 AGO1, Aspi01Gene61220 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g42950 AGO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01026268001 AGO2 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
Gb_34718 PNH, AGO10, ZLL Protein argonaute 10 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_18547g0010 AGO1 Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_243101g0010 AGO1 Protein argonaute 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g30168 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003100 PAZ_dom 495 620
IPR014811 ArgoL1 439 489
IPR032473 Argonaute_Mid_dom 687 763
IPR032472 ArgoL2 630 676
IPR003165 Piwi 779 1098
IPR032474 Argonaute_N 295 429
No external refs found!