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  5. Aspi01Gene27689.t1

Aspi01Gene27689.t1 (emb1138, Aspi01Gene27689)


Aliases : emb1138, Aspi01Gene27689

Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene27689.t1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00110160 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.07 OrthoFinder output from all 47 species
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 OrthoFinder output from all 47 species
Adi_g079817 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ala_g22353 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Als_g26679 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Aob_g15554 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0166.g054407 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dac_g12671 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Dde_g04423 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Gb_04849 emb1138 RH3 plastidial RNA basal splicing factor 0.06 OrthoFinder output from all 47 species
Len_g12708 emb1138 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g49667 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10151 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Msp_g07724 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g06285 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Sam_g09733 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Smo10677 emb1138 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Spa_g17328 emb1138 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g07132 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 173 344
IPR001650 Helicase_C 383 491
IPR001878 Znf_CCHC 765 781
IPR012562 GUCT 578 680
No external refs found!