Solyc01g090780.3.1 (Solyc01g090780.3)


Aliases : Solyc01g090780.3

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator transcription regulators


Gene families : OG_01_0002314 (Gene family) Phylogenetic Tree(s): OG0002314_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g090780.3.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G02080 No alias transcription regulators 0.26 Gene family
Cpa|evm.model.tig00000767.19 No alias 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
Cre14.g632950 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
GSVIVT01000874001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.14 Gene family
GSVIVT01018178001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.08 Gene family
GSVIVT01018721001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.11 Gene family
LOC_Os10g40780 Os10g0556700 27.3.67 RNA.regulation of transcription.putative... 0.12 Gene family
MA_42843g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.09 Gene family
Smo440060 PACid_15401945 27.3.67 RNA.regulation of transcription.putative... 0.09 Gene family
Zm00001d027278 No alias 27.3.67 RNA.regulation of transcription.putative... 0.12 Gene family
Zm00001d048546 GRMZM5G827026 27.3.67 RNA.regulation of transcription.putative... 0.14 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007196 CCR4-Not_Not1_C 2018 2388
IPR032193 CNOT1_TTP_bind 657 810
IPR032194 CNOT1_HEAT 475 589
IPR032191 CNOT1_CAF1_bind 959 1179
IPR024557 CCR4-Not_Not1su_DUF3819 1303 1444
No external refs found!