Aspi01Gene27221.t1 (ARF16, Aspi01Gene27221)


Aliases : ARF16, Aspi01Gene27221

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene27221.t1

Target Alias Description ECC score Gene Family Method Actions
AT4G23980 ARF9 auxin response factor 9 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.01 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
Gb_02925 ARF19, IAA22, ARF11 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Ore_g19283 ARF4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212 ARF4 not classified & original description: CDS=1-1212 0.03 OrthoFinder output from all 47 species
Smo437944 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Zm00001e012968_P001 ARF6, Zm00001e012968 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Zm00001e015164_P002 ARF10, Zm00001e015164 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 137 238
IPR010525 ARF_dom 319 402
No external refs found!