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  5. AMTR_s00109p00118420

AMTR_s00109p00118420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.117

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG1/NSN1 regulatory GTPase


Gene families : OG_01_0005153 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005153_tree ,
OG_02_0006836 (LandPlants) Phylogenetic Tree(s): OG_02_0006836_tree ,
OG_03_0006657 (SeedPlants) Phylogenetic Tree(s): OG_03_0006657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00118420
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT3G07050 No alias GTP-binding family protein 0.06 Archaeplastida
Cpa|evm.model.tig00001215.14 No alias Guanine nucleotide-binding protein-like NSN1... 0.02 Archaeplastida
Cre12.g533050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.04 Archaeplastida
LOC_Os01g27730.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.04 Archaeplastida
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.08 Archaeplastida
Pp3c12_9000V3.1 No alias GTP-binding family protein 0.06 Archaeplastida
Pp3c16_1080V3.1 No alias GTP-binding family protein 0.06 Archaeplastida
Solyc06g083520.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.04 Archaeplastida
Solyc09g061430.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.1 Archaeplastida
Zm00001e004937_P002 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.12 Archaeplastida
Zm00001e012467_P001 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.07 Archaeplastida
AT3G07050 No alias GTP-binding family protein 0.05 LandPlants
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 LandPlants
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 LandPlants
LOC_Os01g27730.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.04 LandPlants
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.07 LandPlants
Pp3c16_1080V3.1 No alias GTP-binding family protein 0.06 LandPlants
Solyc06g083520.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 LandPlants
Solyc09g061430.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.1 LandPlants
Zm00001e004937_P002 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.1 LandPlants
Zm00001e012467_P001 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.06 LandPlants
AT3G07050 No alias GTP-binding family protein 0.05 SeedPlants
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 SeedPlants
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 SeedPlants
LOC_Os01g27730.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.04 SeedPlants
Solyc06g083520.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 SeedPlants
Solyc09g061430.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.1 SeedPlants
Zm00001e004937_P002 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.1 SeedPlants
Zm00001e012467_P001 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR014813 Gnl3_N_dom 16 93
IPR006073 GTP-bd 272 327
No external refs found!