Aspi01Gene26482.t1 (PAPS2, Aspi01Gene26482)

Aliases : PAPS2, Aspi01Gene26482

Description : poly(A) RNA polymerase & original description: none

Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene26482.t1

Target	Alias	Description	ECC score	Gene Family Method
AT1G17980	PAPS1	poly(A) polymerase 1	0.03	OrthoFinder output from all 47 species
Dcu_g13917	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g24756	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015292001	PAP(IV), nPAP	RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase	0.01	OrthoFinder output from all 47 species
Gb_12958	PAPS1	poly(A) RNA polymerase	0.01	OrthoFinder output from all 47 species
LOC_Os02g13400.2	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.02	OrthoFinder output from all 47 species
LOC_Os03g19920.1	PAPS3, LOC_Os03g19920	poly(A) RNA polymerase	0.02	OrthoFinder output from all 47 species
Solyc06g066470.4.1	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.08	OrthoFinder output from all 47 species
Zm00001e024922_P001	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043631	RNA polyadenylation	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0070566	adenylyltransferase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007010	PolA_pol_RNA-bd_dom	372	429
IPR007012	PolA_pol_cen_dom	23	368
IPR002934	Polymerase_NTP_transf_dom	94	164

External Links

No external refs found!

Aspi01Gene26482.t1 (PAPS2, Aspi01Gene26482)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation