Aspi01Gene26336.t1 (HSS, ARF1-BP, ARF2,...)


Aliases : HSS, ARF1-BP, ARF2, ORE14, Aspi01Gene26336

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene26336.t1
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g20525 ARF6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012968_P001 ARF6, Zm00001e012968 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e021527_P006 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 186 286
IPR010525 ARF_dom 311 393
IPR033389 AUX/IAA_dom 763 854
No external refs found!