Aspi01Gene25758.t1 (SYD, CHR3, Aspi01Gene25758)

Aliases : SYD, CHR3, Aspi01Gene25758

Description : SMARCA component *(SYD/BRM/MINU) & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene25758.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00058700	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
AMTR_s00090p00148990	SYD, CHR3,...	Chromatin organisation.chromatin remodeling...	0.06	OrthoFinder output from all 47 species
AT2G13370	CHR5	chromatin remodeling 5	0.09	OrthoFinder output from all 47 species
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.09	OrthoFinder output from all 47 species
AT3G06010	ATCHR12	Homeotic gene regulator	0.02	OrthoFinder output from all 47 species
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.07	OrthoFinder output from all 47 species
Adi_g011986	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Adi_g082550	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04898	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g13876	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Ala_g02726	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.07	OrthoFinder output from all 47 species
Ala_g11507	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ala_g12634	PKL, GYM, CHR6,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g17670	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.07	OrthoFinder output from all 47 species
Ala_g27421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.08	OrthoFinder output from all 47 species
Als_g01971	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01984	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.06	OrthoFinder output from all 47 species
Als_g06850	PKR1, CHR4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g16533	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20612	PKR1, CHR4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g56902	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.06	OrthoFinder output from all 47 species
Aob_g29249	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Aob_g29989	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Aop_g05323	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13607	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Azfi_s0007.g010662	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0013.g013433	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ceric.06G006600.1	ATCHR12, Ceric.06G006600	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.10G020300.1	CHR5, Ceric.10G020300	component *(CHR5) of SAGA transcription co-activator...	0.07	OrthoFinder output from all 47 species
Ceric.1Z205000.1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ceric.36G015700.1	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.07	OrthoFinder output from all 47 species
Ceric.37G008600.1	SYD, CHR3,...	SMARCA component *(SYD/BRM/MINU) & original description:...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.24	SYD, CHR3	Chromatin structure-remodeling complex protein SYD...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000350.9	PKR2	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre03.g179300	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Cre08.g377200	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.01	OrthoFinder output from all 47 species
Cre12.g508150	CHR11	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Dcu_g02069	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Dcu_g03207	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Dcu_g03216	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.06	OrthoFinder output from all 47 species
Dcu_g38948	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g10991	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ehy_g15984	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g18387	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
GSVIVT01012117001	PKR1, CHR4	RNA biosynthesis.transcriptional activation.PHD finger...	0.06	OrthoFinder output from all 47 species
GSVIVT01017820001	SYD, CHR3	Chromatin organisation.chromatin remodeling...	0.08	OrthoFinder output from all 47 species
GSVIVT01035901001	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01037235001	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.06	OrthoFinder output from all 47 species
Gb_16961	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.04	OrthoFinder output from all 47 species
Gb_27153	ATCHR12	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species
LOC_Os05g05230.1	ATCHR12, LOC_Os05g05230	chromatin remodeling factor (Snf2)	0.05	OrthoFinder output from all 47 species
LOC_Os06g08480.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
LOC_Os07g31450.1	PKR1, CHR4,...	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
LOC_Os07g46590.1	CHR5, LOC_Os07g46590	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
Len_g01407	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Len_g08675	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Len_g29294	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Len_g35371	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g04300	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g16058	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.07	OrthoFinder output from all 47 species
Lfl_g30624	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
MA_10429361g0010	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.04	OrthoFinder output from all 47 species
MA_8926002g0010	SYD, CHR3	Chromatin structure-remodeling complex protein SYD...	0.04	OrthoFinder output from all 47 species
MA_8990972g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Mp1g05480.1	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.05	OrthoFinder output from all 47 species
Mp2g26680.1	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
Mp4g00040.1	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.06	OrthoFinder output from all 47 species
Mp5g06580.2	SYD, CHR3	chromatin remodeling factor (Snf2)	0.02	OrthoFinder output from all 47 species
Mp5g24460.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Msp_g14786	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g15707	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Nbi_g10938	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g12025	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Nbi_g39328	PKL, GYM, CHR6,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g10377	CHR17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g12701	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g15839	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g16211	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g16726	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Pir_g37964	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Pir_g52065	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g07635	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ppi_g13843	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g18943	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32094	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008777	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018707	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g16204	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g17473	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29220	No alias	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Sam_g29292	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Sam_g36172	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Smo164481	SYD, CHR3	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo177985	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo440203	CHR11	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Smo440815	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Solyc02g068560.3.1	PKR1, CHR4,...	chromatin remodeling factor (Chd3/Mi-2)	0.04	OrthoFinder output from all 47 species
Solyc06g065730.3.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Solyc11g062010.3.1	SYD, CHR3, Solyc11g062010	chromatin remodeling factor (Snf2)	0.07	OrthoFinder output from all 47 species
Spa_g12616	PKL, GYM, CHR6,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g17788	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g21583	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Spa_g24876	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g28947	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Tin_g08468	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e030969_P003	SYD, CHR3, Zm00001e030969	chromatin remodeling factor (Snf2)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	2018	2131
IPR029295	SnAC	2243	2313
IPR000330	SNF2_N	1701	1992

External Links

No external refs found!

Aspi01Gene25758.t1 (SYD, CHR3, Aspi01Gene25758)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation