Aliases : LHCB2.3, LHCB2, LHCB2.4, Aspi01Gene25498
Description : component *(LHCb1/2/3) of LHC-II complex & original description: none
Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Aspi01Gene25498.t1 | |
Cluster | HCCA: Cluster_14 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00136650 | LHCB1.5, LHB1B2,... | Photosynthesis.photophosphorylation.photosystem... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00006p00251360 | evm_27.TU.AmTr_v1... | Photosynthesis.photophosphorylation.photosystem... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00045p00069900 | LHCB1.5, LHB1B2,... | Photosynthesis.photophosphorylation.photosystem... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00045p00070890 | CAB3, AB180,... | Photosynthesis.photophosphorylation.photosystem... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00076p00074970 | LHCB1.3, CAB140,... | Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00153p00078810 | LHCB3*1, LHCB3,... | Photosynthesis.photophosphorylation.photosystem... | 0.04 | OrthoFinder output from all 47 species | |
Aev_g05066 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g28574 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g06137 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g12306 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g02738 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g02850 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g13734 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g03461 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g18116 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g22172 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g23954 | LHCB1.4, LHB1B1 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene66566.t1 | LHCB2.2, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s1940.g108278 | LHCB1.3, CAB140,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g08707 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g38988 | LHCB1.3, CAB140,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g00552 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Dac_g14033 | LHCB3*1, LHCB3 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g29163 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g29164 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g32133 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g31165 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g41148 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g18848 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g48076 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01030053001 | LHCB2.3, LHCB2, LHCB2.4 | Chlorophyll a-b binding protein 151, chloroplastic... | 0.03 | OrthoFinder output from all 47 species | |
Gb_23732 | LHCB1.5, LHB1B2 | component LHCb1/2/3 of LHC-II complex | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g41710.1 | LHCB1.5, LHB1B2,... | component LHCb1/2/3 of LHC-II complex | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g39610.1 | LHCB2.2, LHCB2,... | component LHCb1/2/3 of LHC-II complex | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os07g37550.1 | LHCB3*1, LHCB3,... | component LHCb1/2/3 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g17740.1 | LHCB1.5, LHB1B2,... | component LHCb1/2/3 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os11g13890.1 | LHCB5, LOC_Os11g13890 | component LHCb5 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
Mp7g05530.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.04 | OrthoFinder output from all 47 species | |
Mp7g05980.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.04 | OrthoFinder output from all 47 species | |
Mp7g09340.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.05 | OrthoFinder output from all 47 species | |
Ore_g21027 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c21_3950V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
Pp3c2_36190V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
Pp3c2_36220V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
Pp3c2_36500V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g32552 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0086.g018412 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g005760.1.1 | LHCB1.3, CAB140,... | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
Solyc07g063600.3.1 | LHCB3*1, LHCB3,... | component LHCb1/2/3 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
Spa_g10842 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g04406 | LHCB3*1, LHCB3 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g12536 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g32122 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e004940_P001 | LHCB2.3, LHCB2,... | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e004941_P001 | LHCB2.3, LHCB2,... | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e032450_P001 | LHCB1.5, LHB1B2,... | Chlorophyll a-b binding protein, chloroplastic OS=Zea... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e034922_P001 | LHCB1.5, LHB1B2,... | Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR022796 | Chloroa_b-bind | 69 | 234 |
No external refs found! |