Solyc01g087280.1.1 (Solyc01g087280.1)


Aliases : Solyc01g087280.1

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. QUARTET 2 (QRT2)


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g087280.1.1
Cluster HCCA cluster: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.04 Gene family
GSVIVT01008062001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01017305001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01032118001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01033362001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033364001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
LOC_Os03g59330 Os03g0808000,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_285723g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.06 Gene family
MA_63122g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
MA_754919g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc04g015530.2.1 Solyc04g015530.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc10g080210.2.1 Solyc10g080210.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc12g009420.2.1 Solyc12g009420.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d034551 GRMZM2G092746,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d034559 GRMZM2G004500 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d038874 GRMZM2G079263 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 77 403
No external refs found!