AMTR_s00109p00103350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.97

Description : External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.CERBERUS/LIN ubiquitin E3 ligase


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0003337 (SeedPlants) Phylogenetic Tree(s): OG_03_0003337_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00103350
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009918001 No alias External stimuli response.biotic... 0.04 Archaeplastida
Gb_38779 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 Archaeplastida
Mp2g17510.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 Archaeplastida
Smo418457 No alias External stimuli response.biotic... 0.02 Archaeplastida
Solyc01g066740.3.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 Archaeplastida
Solyc04g057940.4.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 Archaeplastida
Zm00001e013722_P001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 Archaeplastida
GSVIVT01009918001 No alias External stimuli response.biotic... 0.04 LandPlants
GSVIVT01026271001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.02 LandPlants
Gb_38779 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 LandPlants
Solyc04g057940.4.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 LandPlants
GSVIVT01009918001 No alias External stimuli response.biotic... 0.02 SeedPlants
Gb_38779 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 SeedPlants
Solyc04g057940.4.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 405 475
IPR001680 WD40_repeat 1210 1244
IPR001680 WD40_repeat 1176 1201
No external refs found!