Solyc01g081290.3.1 (Solyc01g081290.3)


Aliases : Solyc01g081290.3

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g081290.3.1
Cluster HCCA cluster: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01016860001 No alias No description available 0.04 Gene family
GSVIVT01017075001 No alias No description available 0.05 Gene family
GSVIVT01030054001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01033004001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01035837001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.04 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.02 Gene family
MA_107356g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_108139g0010 No alias No description available 0.02 Gene family
MA_11454g0010 No alias No description available 0.04 Gene family
MA_121267g0010 No alias No description available 0.02 Gene family
MA_14659g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_18165g0010 No alias No description available 0.02 Gene family
MA_252238g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_27147g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_3317g0020 No alias No description available 0.03 Gene family
MA_3449g0010 No alias No description available 0.03 Gene family
MA_445076g0010 No alias No description available 0.04 Gene family
MA_56714g0010 No alias No description available 0.02 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_86894g0010 No alias No description available 0.02 Gene family
MA_90090g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo113567 PACid_15417087 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo30095 PACid_15411160 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo70183 PACid_15418303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc06g062610.2.1 Solyc06g062610.2 No description available 0.03 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.04 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.03 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037891 No alias No description available 0.02 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 182 228
IPR002885 Pentatricopeptide_repeat 583 630
IPR002885 Pentatricopeptide_repeat 283 328
IPR002885 Pentatricopeptide_repeat 383 428
IPR002885 Pentatricopeptide_repeat 81 127
IPR032867 DYW_dom 757 881
IPR002885 Pentatricopeptide_repeat 355 382
IPR002885 Pentatricopeptide_repeat 558 581
IPR002885 Pentatricopeptide_repeat 457 483
IPR002885 Pentatricopeptide_repeat 485 515
No external refs found!