Aspi01Gene23730.t1 (ATRPA70A, RPA1A,...)

Aliases : ATRPA70A, RPA1A, ATRPA1A, RPA70A, Aspi01Gene23730

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex & original description: none

Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene23730.t1
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
Ceric.07G018700.1	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Msp_g42815	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0107.g020372	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007199	Rep_factor-A_N	5	101
IPR004365	NA-bd_OB_tRNA	271	353
IPR031657	REPA_OB_2	381	485
IPR013955	Rep_factor-A_C	542	691
IPR001878	Znf_CCHC	817	832

External Links

No external refs found!

Aspi01Gene23730.t1 (ATRPA70A, RPA1A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation