Solyc01g080840.3.1 (Solyc01g080840.3)


Aliases : Solyc01g080840.3

Description : 29.3.3 protein.targeting.chloroplast Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. Albino or Glassy Yellow 1 (AGY1)


Gene families : OG_01_0001773 (Gene family) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g080840.3.1
Cluster HCCA cluster: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
AT4G01800 SECA1, AtcpSecA, AGY1 Albino or Glassy Yellow 1 0.04 Gene family
Cpa|evm.model.tig00000219.51 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.02 Gene family
Cre12.g517900 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.03 Gene family
GSVIVT01028249001 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.18 Gene family
LOC_Os01g21820 Os01g0321300 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.11 Gene family
LOC_Os11g08980 Os11g0195100 29.3.3 protein.targeting.chloroplast Encodes a component... 0.03 Gene family
Smo156007 PACid_15405959 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.07 Gene family
Zm00001d040686 GRMZM5G880102 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.11 Gene family

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan
BP GO:0017038 protein import IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011115 SecA_DEAD 87 454
IPR011116 SecA_Wing/Scaffold 760 974
IPR011130 SecA_preprotein_X-link_dom 304 410
No external refs found!