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Aliases : NFD03, HMGB3, NFD3, Aspi01Gene22135
Description : DNA bending architectural protein *(HMG-B) & original description: none
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aspi01Gene22135.t1 | |
| Cluster | HCCA: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G23800 | No alias | HMG (high mobility group) box protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g007317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g012117 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g018094 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g080941 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g080942 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g124291 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g04363 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g24042 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g28166 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Als_g10080 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g13137 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g13580 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g26560 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g44054 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g05660 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g08723 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g03365 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g23124 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g38218 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g10021 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g11082 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.23G068700.1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Cre06.g261450 | ATHMG, HMG, SSRP1, NFD | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g07598 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g36188 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g39139 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01019504001 | No alias | High mobility group B protein 13 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01034361001 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Gb_05796 | NFD2, HMG BETA... | High mobility group B protein 1 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_23297 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_32435 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g15810.1 | LOC_Os02g15810 | High mobility group B protein 13 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os08g01100.1 | HMGB6, LOC_Os08g01100 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os09g37910.1 | NFD2, HMG BETA... | HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g16826 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g21317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g05840 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g21733 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
| Lfl_g24387 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g24536 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g12330.1 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g01263 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g38531 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g06088 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g12748 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g22023 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g04305 | NFD1, HMGB1 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g13918 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g49262 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g61736 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0014.g006223 | NFD2, HMG BETA... | not classified & original description: CDS=1-750 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0055.g014473 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17368 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g27294 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g31468 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g36464 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g40555 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc04g008820.3.1 | HMGB6, Solyc04g008820 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc08g082070.3.1 | Solyc08g082070 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g04270 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g10432 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g15059 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g00083 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g03032 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g07416 | HMGB5, NFD5, NFD05, HMGD | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g44303 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g45467 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e010305_P004 | NFD2, HMG BETA... | HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009071 | HMG_box_dom | 54 | 123 |
| No external refs found! |