Aspi01Gene20233.t1 (CHR5, Aspi01Gene20233)

Aliases : CHR5, Aspi01Gene20233

Description : component *(CHR5) of SAGA transcription co-activator complex & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene20233.t1

Target	Alias	Description	ECC score	Gene Family Method
AT2G44980	No alias	SNF2 domain-containing protein / helicase...	0.02	OrthoFinder output from all 47 species
Adi_g011533	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g41954	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ala_g11507	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ala_g27421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g36219	ATCHR12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01984	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ceric.21G025000.1	CHR11, Ceric.21G025000	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000128.11	CHR17	ISWI chromatin-remodeling complex ATPase CHR17...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000350.9	PKR2	CHD3-type chromatin-remodeling factor PICKLE...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre08.g377200	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Dcu_g03207	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dde_g10991	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dde_g15247	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
GSVIVT01017791001	CHR17	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01037235001	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.06	OrthoFinder output from all 47 species
MA_77097g0010	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp5g24460.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Msp_g14786	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11423	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Sam_g16204	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g36819	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Smo102849	ATCHR12	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo177985	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Smo440203	CHR11	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Smo440815	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Tin_g13484	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g14271	PKL, GYM, CHR6,...	CHD3-type chromaTin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025260	CHD1-like_C	1070	1163
IPR000330	SNF2_N	158	428
IPR023780	Chromo_domain	49	103
IPR001650	Helicase_C	457	570

External Links

No external refs found!

Aspi01Gene20233.t1 (CHR5, Aspi01Gene20233)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation