Aspi01Gene19337.t2 (PUB26, Aspi01Gene19337)

Aliases : PUB26, Aspi01Gene19337

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene19337.t2

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00159240	PUB23,...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00069p00038840	PUB22,...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT3G02840	No alias	ARM repeat superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G19380	PUB25	plant U-box 25	0.03	OrthoFinder output from all 47 species
AT3G52450	PUB22	plant U-box 22	0.03	OrthoFinder output from all 47 species
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.04	OrthoFinder output from all 47 species
Adi_g014414	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02187	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g10929	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g23643	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30969	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g33086	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g52007	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g12417	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene07828.t1	PUB26, Aspi01Gene07828	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene18444.t1	PUB23, Aspi01Gene18444	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene18451.t1	PUB25, Aspi01Gene18451	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene19350.t1	PUB26, Aspi01Gene19350	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene19375.t1	PUB26, Aspi01Gene19375	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene27391.t1	PUB26, Aspi01Gene27391	U-Box-group-III E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene44809.t1	PUB25, Aspi01Gene44809	U-Box-group-III E3 ubiquitin ligase & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene51624.t1	PUB15, Aspi01Gene51624	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene55033.t1	PUB25, Aspi01Gene55033	U-Box-group-III E3 ubiquitin ligase & original description: none	0.09	OrthoFinder output from all 47 species
Aspi01Gene60604.t1	PUB26, Aspi01Gene60604	U-Box-group-III E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Azfi_s0096.g043747	PUB26	not classified & original description: CDS=1-1407	0.03	OrthoFinder output from all 47 species
Dcu_g04484	PUB25	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g07421	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g10795	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g21913	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011616001	CMPG1, ATCMPG1	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_17119	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_33334	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Gb_33369	No alias	U-box domain-containing protein 30 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g64570.1	PUB23, LOC_Os01g64570	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os06g13870.1	LOC_Os06g13870	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os10g03440.1	LOC_Os10g03440	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os12g06410.1	PUB24, LOC_Os12g06410	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g01810	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10433846g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_52661g0010	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_8837995g0010	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_95662g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g06090.1	PUB25	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Mp3g22750.1	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp7g11000.1	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Msp_g12974	PUB25	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g09512	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g08920	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g08921	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g21647	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g36530	PUB23	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g38095	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12470	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c22_7680V3.1	Pp3c22_7680	CYS, MET, PRO, and GLY protein 2	0.02	OrthoFinder output from all 47 species
Pp3c4_20710V3.1	PUB26, Pp3c4_20710	plant U-box 25	0.01	OrthoFinder output from all 47 species
Ppi_g18199	PUB23	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Solyc04g008100.3.1	Solyc04g008100	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc04g071030.1.1	Solyc04g071030	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Zm00001e000999_P001	Zm00001e000999	U-box domain-containing protein 20 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e006484_P001	PUB23, Zm00001e006484	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e014766_P001	CMPG2, ATCMPG2,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e022679_P001	CMPG2, ATCMPG2,...	U-box domain-containing protein 29 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e036030_P001	Zm00001e036030	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e041397_P001	PUB23, Zm00001e041397	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	16	87

External Links

No external refs found!

Aspi01Gene19337.t2 (PUB26, Aspi01Gene19337)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation