AMTR_s00109p00045690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.32

Description : Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana


Gene families : OG_01_0009354 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009354_tree ,
OG_02_0007114 (LandPlants) Phylogenetic Tree(s): OG_02_0007114_tree ,
OG_03_0006861 (SeedPlants) Phylogenetic Tree(s): OG_03_0006861_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00045690
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT5G25630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01015378001 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 Archaeplastida
GSVIVT01035672001 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.04 Archaeplastida
Smo21211 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.04 Archaeplastida
Solyc08g068230.4.1 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.03 Archaeplastida
AT5G21222 No alias protein kinase family protein 0.09 LandPlants
AT5G25630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
GSVIVT01035672001 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.02 LandPlants
Gb_09464 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.06 LandPlants
MA_38077g0010 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 LandPlants
Pp3c16_9240V3.1 No alias protein kinase family protein 0.05 LandPlants
Solyc08g068230.4.1 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.02 LandPlants
Zm00001e034408_P002 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 LandPlants
AT5G21222 No alias protein kinase family protein 0.09 SeedPlants
AT5G25630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
GSVIVT01035672001 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.02 SeedPlants
Gb_09464 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.05 SeedPlants
MA_38077g0010 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 SeedPlants
Solyc08g068230.4.1 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.02 SeedPlants
Zm00001e034408_P002 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 342 390
IPR002885 Pentatricopeptide_repeat 206 249
IPR002885 Pentatricopeptide_repeat 133 179
IPR002885 Pentatricopeptide_repeat 412 459
IPR002885 Pentatricopeptide_repeat 279 319
No external refs found!