Aspi01Gene17992.t1 (PUB25, Aspi01Gene17992)

Aliases : PUB25, Aspi01Gene17992

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene17992.t1
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00043p00215340	PUB8, B80,...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT5G65920	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g021934	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g28879	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11371	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07152	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18761	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20934	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g14166	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g18954	PUB25	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Gb_11650	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_33369	No alias	U-box domain-containing protein 30 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os02g34410.1	PUB25, LOC_Os02g34410	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os04g34030.1	PUB23, LOC_Os04g34030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_52661g0010	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_5536318g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_73410g0010	No alias	U-box domain-containing protein 31 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp7g11000.1	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Msp_g38744	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g33878	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37565	PUB26	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g12004	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717	PUB26	not classified & original description: CDS=1-1404	0.04	OrthoFinder output from all 47 species
Sam_g15131	No alias	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Smo231257	PUB26	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo403954	PUB25	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Spa_g09127	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007109_P001	PUB23, Zm00001e007109	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	5	76

External Links

No external refs found!

Aspi01Gene17992.t1 (PUB25, Aspi01Gene17992)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation