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  5. Aspi01Gene17777.t1

Aspi01Gene17777.t1 (SHP2, AGL5, Aspi01Gene17777)


Aliases : SHP2, AGL5, Aspi01Gene17777

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene17777.t1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00208680 AGL16,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AT3G57390 AGL18 AGAMOUS-like 18 0.01 OrthoFinder output from all 47 species
Als_g26907 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g08623 AGL71 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G063000.1 AGL65, Ceric.14G063000 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
LOC_Os04g52410.2 AGL32, TT16,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Msp_g05081 AGL65 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g38833 AGL21 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g07685 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32224 AGL15 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48748 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48749 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g150138.1.1 Solyc07g150138 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g28690 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e022819_P002 AGL16, Zm00001e022819 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 71 118
No external refs found!