Aspi01Gene17117.t2 (ATLIG4, LIG4, Aspi01Gene17117)


Aliases : ATLIG4, LIG4, Aspi01Gene17117

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none


Gene families : OG0003019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene17117.t2
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g51700.1 ATLIG4, LIG4,... Putative DNA ligase 4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001357 BRCT_dom 293 375
IPR012309 DNA_ligase_ATP-dep_C 104 221
IPR012310 DNA_ligase_ATP-dep_cent 1 80
No external refs found!