Solyc01g057780.3.1 (Solyc01g057780.3)


Aliases : Solyc01g057780.3

Description : 30.5 signalling.G-proteins Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. VARIEGATED 3 (VAR3)


Gene families : OG_01_0009313 (Gene family) Phylogenetic Tree(s): OG0009313_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g057780.3.1
Cluster HCCA cluster: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g59980 Os01g0815700 30.5 signalling.G-proteins Encodes a 85.9 kDa protein... 0.08 Gene family
Zm00001d012529 GRMZM2G069106 30.5 signalling.G-proteins Encodes a 85.9 kDa protein... 0.13 Gene family
Zm00001d043095 GRMZM2G312244 30.5 signalling.G-proteins Encodes a 85.9 kDa protein... 0.04 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 263 290
IPR001876 Znf_RanBP2 297 323
No external refs found!